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This is the development home of the workflow management system Snakemake. For general information, see
Diamond is a python daemon that collects system metrics and publishes them to Graphite (and others). It is capable of collecting cpu, memory, network, i/o, load and disk metrics. Additionally, it f…
Retrieve author and publication information from Google Scholar in a friendly, Pythonic way without having to worry about CAPTCHAs!
Painlessly create beautiful matplotlib plots.
Create animated bar chart races in Python with matplotlib
A Python package to manage extremely large amounts of data
🎨 A succinct matplotlib wrapper for making beautiful, publication-quality graphics
An open-source application for biological image analysis
Scripts to download genomes from the NCBI FTP servers
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Bokeh Plotting Backend for Pandas and GeoPandas
A comprehensive library for computational molecular biology
Python library to facilitate genome assembly, annotation, and comparative genomics
Python library to handle Gene Ontology (GO) terms
python module to plot beautiful and highly customizable genome browser tracks
Chapyter: ChatGPT Code Interpreter in Jupyter Notebooks
Phylogenetic orthology inference for comparative genomics
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Fast genome-wide functional annotation through orthology assignment
Incubator for useful bioinformatics code, primarily in Python and R
Structural variation caller using third generation sequencing