A Variant Call Format reader for Python.

Cookiecutter for snakemake slurm profile

TSEBRA: Transcript Selector for BRAKER

Simple library/pipeline to generate and handle Hi-C data.

wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication

Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach

Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

Hybrid error correction approach for long reads using overlap graph

Pan-genome analysis of Chinese (PGC)

Forms SV cliques using the CAST (Cluster Affinity Search Technique) algorithm.

Python package and routines for merging SV VCF files

Plot structural variant signal from a BAM/CRAM

Python library to facilitate genome assembly, annotation, and comparative genomics

UCSC Nanopore

Some scripts used in my research

Population genetic analysis of SVs in Chinese (PGC)