Manage headless displays with Xvfb (X virtual framebuffer)

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

An updated pipeline for pangenome investigation

A pure-python implementation of the UpSet suite of visualisation methods by Lex, Gehlenborg et al.

A comparison of different Oxford Nanopore basecallers

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

GFF and GTF file manipulation and interconversion

Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

Nanopore sequence read simulator

SUPPA: Fast quantification of splicing and differential splicing

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

Miscellaneous collection of Python and R scripts for processing Iso-Seq data

This Snakemake pipeline implements the GATK best-practices workflow

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

PEPPER-Margin-DeepVariant

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data

Biopython Tutorial Chinese Translation

A genome completeness evaluation tool based on miniprot

Using Deep Learning to predict gene annotations

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads

FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries

Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network out…

让我们以刷LeetCode题目的形式，来编程解决生物信息学问题吧，Come on

A structural variation pipeline for short-read sequencing

CLI tool for flexible and fast adaptive sampling on ONT sequencers

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

Antimicrobial Resistance Identification By Assembly