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Starred repositories
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
A list of interesting genome browser and genome visualization programs
MMseqs2: ultra fast and sensitive search and clustering suite
scikit-learn: machine learning in Python
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
Package for fetching metadata and downloading data from SRA/ENA/GEO
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…
This is the development home of the workflow management system Snakemake. For general information, see
UCSC Genome Browser source. "beta" is released version / "master" is testing.
A curated list of awesome Jupyter projects, libraries and resources
A DSL for data-driven computational pipelines
Jupyter metapackage for installation and documentation
Interactive Widgets for the Jupyter Notebook
An open-source application for biological image analysis
Official home of genome aligner based upon notion of Cactus graphs
A structural variation pipeline for short-read sequencing
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
ARG-Needle library for representing and analyzing ancestral recombination graphs (ARGs)
Aligns short reads using dynamic seed size with strobemers
Versatile open-source tool for microbiome analysis
Apache ECharts is a powerful, interactive charting and data visualization library for browser
A local-haplotagging-based small and structural variant caller
Fast, Accurate and Memory-Efficient Principal Component Analysis For Tera-scale Dataset
Multiplatform plotting library based on the Grammar of Graphics