Stars
This is the development home of the workflow management system Snakemake. For general information, see
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
MGnify genome analysis pipeline
Making Protein folding accessible to all!
Multi-user server for Jupyter notebooks
The second version of the Kraken taxonomic sequence classification system
Assigning precursor-product ion relationships in indiscriminant MS/MS data
Python library for large-scale targeted metabolomics.
A companion R package for the MicrobiomeAnalyst web server
A Python package for exploring and analysing genetic variation data
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Official repository of open data MassBank records, with released versions also available from https://doi.org/10.5281/zenodo.3378723
COBRApy is a package for constraint-based modeling of metabolic networks.
A tool for generating consensus long-read assemblies for bacterial genomes
A database for signatures of public genomic sources
Relaunch of the initial MetFrag project.
Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono
MMseqs2: ultra fast and sensitive search and clustering suite
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
💡 Easily improve the user experience of your Shiny apps in seconds
SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)