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An easy-to-learn/use static analysis framework for Java
Burp plugin able to find reflected XSS on page in real-time while browsing on site
TLS-Attacker is a Java-based framework for analyzing TLS libraries. It can be used to manually test TLS clients and servers or as as a software library for more advanced tools.
A natural evolution of Burp Suite's Repeater tool
Compiler from the famous Dragon Book (Compilers: Principles, Techniques, and Tools (2nd Edition)) in Java.