Nim is a statically typed compiled systems programming language. It combines successful concepts from mature languages like Python, Ada and Modula. Its design focuses on efficiency, expressiveness,…

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Interactive Nim shell / REPL / Playground

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

The HPC toolbox: fused matrix multiplication, convolution, data-parallel strided tensor primitives, OpenMP facilities, SIMD, JIT Assembler, CPU detection, state-of-the-art vectorized BLAS for float…

nim wrapper for htslib for parsing genomics data files

🚀 seqfu - Sequece Fastx Utilities

seqcover allows users to view coverage for hundreds of genes and dozens of samples

useful command-line tools written to showcase hts-nim

simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.

DNA kmer operations for nim

Language benchmarks that are important for Bioinformatics scripting