PtyRAD: Ptychographic Reconstruction with Automatic Differentiation

A python extension for the automatic alignment of a source image or a stack (movie) to a target image/reference frame.

an ImageJ toolset for EM image analysis

OpenECCI is a Python library for Electron Channelling Contrast Imaging (ECCI) analysis of crystal defects in Scanning Electron Microscope (SEM)

This is where the code for the NANOmi open source electron microscope lives.

A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.

The software ReciPro makes various crystallographic calculations, visualizes a crystal structure, simulates a diffraction pattern and high-resolution TEM image, indexes diffraction spots, plots ste…

SymmetrySTEM - symmetry analysis in 4D-STEM data

A single package for analyzing atomic resolution STEM, 4D-STEM and STEM-EELS datasets, along with basic STEM simulation functionality

STEM/TEM/Coherent CBED image simulations

A DM plugin to extract quantitative information from STEM (HAADF-ABF) images.

A tool to calculate the atomic displacement in some polarized materials with a distorted perovskite structure.

Geometrical Phase Analysis with the HyperSpy framework.

SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.

An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images

CCEM Image processing tutorial

The interactive graphing library for Python ✨

Python wrapper for the scripting interface of Thermo Fisher Scientific and FEI microscopes.

Making figures and movies with code

A Python toolbox for gaining geometric insights into high-dimensional data

Simple Jekyll theme for a minimal resume website: https://jekyll-theme-minimal-resume.netlify.app

Jupyter notebooks for learning how to use SimpleITK

AutoDisk is a method to analyze 4D-STEM datasets and estimate lattice parameters. Here, we show a demo to walk the user through each step in this process.

Reconstruction of an oversampled micrograph from a STEM Moiré hologram

C++/CUDA package for parallelized simulation of image formation in Scanning Transmission Electron Microscopy (STEM) using the PRISM and multislice algorithms

pyenv for Windows. pyenv is a simple python version management tool. It lets you easily switch between multiple versions of Python. It's simple, unobtrusive, and follows the UNIX tradition of singl…