Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

A computational platform to visualize and analyze temporal proteome and protein interaction data from user-derived experiments

A tool integrates channel abundances from multiple TMT samples and exports a general report for downstream analysis.

SUmmarizing Multiple Enrichment analysis Results

Collaborative Resources for the UCSD/SIO R Users Group

Database for AI. Store Vectors, Images, Texts, Videos, etc. Use with LLMs/LangChain. Store, query, version, & visualize any AI data. Stream data in real-time to PyTorch/TensorFlow. https://activelo…

R interface to morpheus.js heatmap widget

Python packaging for CPTAC data

May Institute 2020 Online - Intermediate R Crash Course

Weka package for the Deeplearning4j java library

Python library to handle Gene Ontology (GO) terms

Machine learning, computer vision, statistics and general scientific computing for Android and Java

MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.

An Open Source Machine Learning Framework for Everyone

Gephi - The Open Graph Viz Platform

Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities

A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file

Apache Mahout logistic regression demo

A 2D chart library for Java applications (JavaFX, Swing or server-side).

PINT is a new comprehensive web-based system to store, visualize, and query experimental proteomics data obtained under different experimental conditions and projects. PINT provides a very powerful…

Deprecated complex-view, please use https://github.com/Complex-Portal/complex-portal-view

Repository for mzIdentML and the corresponding examples

Schema.org - schemas and supporting software