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Pull requests: snakemake/snakemake

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Pull requests list

feat: Allow for dict queries in storage objects
#3425 opened Mar 14, 2025 by MattMonk Loading…
2 tasks done
@MattMonk
3
fix: standardize handling of resources bug Something isn't working
#3421 opened Mar 13, 2025 by pvandyken Loading…
2 tasks done
@pvandyken
71
feat(docker): optimize Dockerfile for caching, security, and efficiency
#3402 opened Mar 12, 2025 by Alputer Loading…
1 of 2 tasks
@Alputer
14
fix: Print shell cmds when using wrappers
#3397 opened Mar 12, 2025 by schrins Loading…
1 of 2 tasks
24
fix: group resources
#3367 opened Mar 11, 2025 by fgvieira Loading…
2 tasks done
@pvandyken
3
feat: generic software deployment plugin support
#3339 opened Mar 6, 2025 by johanneskoester Loading…
2 tasks
23
feat: make conda/apptainer/network tests skippable via env vars
#3312 opened Feb 26, 2025 by mschubert Loading…
2 tasks done
14
feat: add cli option to provide source file manifest to specify workflow source files
#3300 opened Feb 17, 2025 by kriemo Loading…
2 tasks
6
feat: New CLI argument --premable-only, acting as a flexible side-kick to --draft-notebook stale
#3281 opened Feb 2, 2025 by moritzschaefer Loading…
2 of 3 tasks
1
4
fix: Encoded filenames too long for Windows stale
#3275 opened Jan 28, 2025 by euronion Loading…
1 of 2 tasks
1
4
fix: try to set mtime of http(s) source files if possible stale
#3260 opened Jan 22, 2025 by johanneskoester Loading…
2 tasks done
6
feat: lambda functions for priority in rules
#3253 opened Jan 14, 2025 by TheSkyentist Loading…
2 tasks done
13
fix: adapt Dockerfile to changes in Snakemake stale
#3225 opened Dec 7, 2024 by siddu-09 Loading…
2 tasks
6
feat: assume checkpoint safe temp files
#3218 opened Nov 22, 2024 by mhulsman Loading…
2 tasks done
6
feat: add support for conda-lock unified lockfile stale
#3200 opened Nov 12, 2024 by laf070810 Loading…
2 tasks
6
feat: Initial attempt at adding a --any-of feature
#3115 opened Oct 4, 2024 by WeatherGod Loading…
1 of 2 tasks
16
docs: Suppress autosectionlabel duplicate warnings and header level skipped warning
#3059 opened Aug 29, 2024 by vandalt Loading…
2 tasks done
1
11
fix: parse_config yaml using safe loader with datetime handler
#2993 opened Aug 1, 2024 by ollie-bell Loading…
2 tasks
1
16
feat: cached bulk DAG update for multiple cluster jobs at once (series-7) stale
#2991 opened Jul 31, 2024 by epruesse Loading…
2 tasks
6
chore: add testcases for issue #1697
#2752 opened Mar 12, 2024 by mawenzy Loading…
9
chore(deps): bump marocchino/sticky-pull-request-comment from 2.8.0 to 2.9.0 dependencies Pull requests that update a dependency file stale
#2675 opened Feb 5, 2024 by dependabot bot Loading…
2
feat: add support for comma in wildcards
#2659 opened Jan 30, 2024 by Feelx234 Loading…
2 tasks done
3
feat: allow input url passthrough to executor backend stale
#2639 opened Jan 22, 2024 by KrKOo Loading…
2 tasks
5
feat: add function to get unnamed arguments from input output files stale
#2509 opened Nov 10, 2023 by SilasK Loading…
1 of 2 tasks
13
feat!: Let wrapper log to stderr and stout file seperately.
#2474 opened Oct 10, 2023 by SilasK Loading…
2 tasks done
3
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