Skip to content

Pull requests: snakemake/snakemake

New pull request New
83 Open 1,782 Closed
83 Open 1,782 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Assigned to nobody Loading
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

feat(persistence): add wildcards to job metadata
#3888 opened Dec 16, 2025 by nh13 Loading…
3
docs: explain how to pass nested config via CLI
#3885 opened Dec 15, 2025 by kjohnsen Loading…
2 tasks done
1
build(deps): bump actions/upload-artifact from 5 to 6 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#3883 opened Dec 15, 2025 by dependabot bot Loading…
1
test: pathvars in modules using input fkt #3877
#3878 opened Dec 13, 2025 by votti Loading…
2 tasks done
4
fix: Fix issue #3862
#3864 opened Dec 5, 2025 by jackerschott Loading…
2 tasks done
1
9
refactor: LoggerManager setup and scope
#3851 opened Nov 27, 2025 by jlumpe Loading…
6
feat: add function get_tmp to ioutils, and allow ioutils functions to be used when parsing resources
#3820 opened Oct 31, 2025 by fgvieira Loading…
2 tasks done
20
feat: replace #3365 with a unified and robust usewith function for rule parameter updates
#3793 opened Oct 13, 2025 by Hocnonsense Loading…
1 of 2 tasks
12
test: symlink to directory "has older modification time" than target (#3782)
#3784 opened Oct 10, 2025 by thekswenson Loading…
2 tasks
2
fix!: remove cpu_usage and calc load fro cpu_time
#3781 opened Oct 8, 2025 by fgvieira Loading…
2 tasks done
Snakemake 10.0.0
5
fix: set log level accordingly when debug dag is set
#3778 opened Oct 6, 2025 by cademirch Loading…
2 tasks
1
2
docs: update for discord and stack overflow
#3765 opened Oct 1, 2025 by cmeesters • Draft
1
fix: Do not release lock when job finished
#3744 opened Sep 18, 2025 by ChristofferCOASD Loading…
15
feat: support python 3.14
#3739 opened Sep 12, 2025 by maarten-k • Draft
26 of 27 tasks
3
feat!: federated execution by specifying per-rule executors WIP Work in progress. Not meant for merging.
#3721 opened Sep 3, 2025 by johanneskoester • Draft
2 tasks
6
fix: rerun rule if timestamp updated, even if checksum same (rerun-trigger mtime)
#3690 opened Aug 4, 2025 by ckronlage Loading…
2 tasks done
@johanneskoester
4
Added high-level diagrams
#3647 opened Jun 29, 2025 by ivanmilevtues Loading…
2 tasks done
5
fix: create local clone of git repos for source files from hosting providers
#3643 opened Jun 23, 2025 by johanneskoester Loading…
2 tasks done
6
fix: pluralise checkpoints.get()
#3562 opened May 6, 2025 by kdm9 Loading…
18
chore: add test case for ensuring that remote output files are still properly uploaded to storage in case of failing jobs within the group stale
#3549 opened Apr 25, 2025 by johanneskoester Loading…
2 tasks done
2
fix: Refactor of format_job_exec related to issue 2981, 3221 stale
#3521 opened Apr 8, 2025 by tbooth Loading…
7
feat: persist the names of the parameters enhancement New feature or request hackathon-2025
#3440 opened Mar 14, 2025 by DrYak Loading…
2 tasks done
8
fix: Add a check for nodelocal when selecting which files to store stale
#3439 opened Mar 14, 2025 by tadasbar Loading…
2 tasks done
@tadasbar
5
fix: enable default default prefix for source archive upload stale
#3432 opened Mar 14, 2025 by jakevc • Draft
2 tasks
1
5
feat: initial save write cli command/profile and config info stale
#3427 opened Mar 14, 2025 by cademirch Loading…
1 of 2 tasks
16
ProTip! Find all pull requests that aren't related to any open issues with -linked:issue.