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pomegranateukbiobank Public
Repository with phenotyping algorithms for UK Biobank.
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discrete_frechet Public
Compute the Fréchet distance between two polygonal curves in Euclidean space.
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opencodecounts Public
Forked from bennettoxford/opencodecountsClinical Code Usage Counts in England
R Other UpdatedOct 17, 2025 -
Identification of clinically meaningful, overlapping obstructive respiratory disease subtypes via data-driven approaches in a primary care population
Jupyter Notebook UpdatedSep 15, 2025 -
MedCAT Public
Forked from CogStack/MedCATMedical Concept Annotation Tool
Python Other UpdatedNov 27, 2024 -
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ctgov_rag Public
Forked from JPonsa/ctgov_ragRetrieval Augmented Generation (RAG) system for ClinicalTrials.gov
Jupyter Notebook UpdatedAug 9, 2024 -
A compute graph for loading and transforming OWID's data
Python MIT License UpdatedAug 9, 2024 -
chronological-map-phenotypes Public
Machine-readable version of electronic health record phenotypes for Kuan V. and Denaxas S. et al.
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nkua-health-data-science Public
Pandas teaching materials for NKUA
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PokemonRedExperiments Public
Forked from PWhiddy/PokemonRedExperimentsPlaying Pokemon Red with Reinforcement Learning
Jupyter Notebook MIT License UpdatedOct 16, 2023 -
ukbiobank-read-to-phecode Public
Repository for Denaxas S. et al., AMIA Annu Symp Proc. 2021; 2021: 362–371.
UpdatedSep 15, 2023 -
tofu Public
Tofu is a Python tool for generating synthetic UK Biobank data.
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apollo-backend Public
Forked from christianselig/apollo-backendApollo backend server
Go UpdatedJun 8, 2023 -
HDR UK National Phenotype Library
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ukbiobank-resources Public
A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.
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crawl Public
Forked from crawl/crawlDungeon Crawl: Stone Soup official repository
C++ Other UpdatedJan 30, 2023 -
phemap Public
Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records
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caliber-multimorbidity-shiny Public
Source code for interactive R Shiny tools to explore and visualize multimorbidity in national electronic health records
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ConceptLibraryClient Public
Forked from SwanseaUniversityMedical/ConceptLibraryClientAn implementation of the API client for the concept library in R.
R GNU General Public License v3.0 UpdatedAug 25, 2022 -
mkdocs Public
Forked from mkdocs/mkdocsProject documentation with Markdown.
Python BSD 2-Clause "Simplified" License UpdatedFeb 7, 2022 -
CCU002_02 Public
Forked from BHFDSC/CCU002_02CVD-COVID-UK project: SARS-CoV-2 vaccination and risk of venous thromboembolism and arterial thrombotic events
Python Apache License 2.0 UpdatedDec 14, 2021 -
docker-ukbiobank-utils Public
Docker image for running UK Biobank utilities: ukbunpack, ukbfetch, ukblink, ukbgene, ukbmd5, ukbconv, and gfetch
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scikit-surgerydocker Public
Forked from UCL/scikit-surgerydockerThis repo describes with a simple example how to use docker to containerise your project/algorithm
HTML Other UpdatedJun 15, 2021 -
OnToma Public
Forked from opentargets/OnTomaMap your disease and phenotype terms to the Open Targets platform ontology
Python Other UpdatedMar 16, 2021 -
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ukb-biomarker-phenotypes Public
Phenotyping algorithms for common biomarkers in primary care EHR for UK Biobank
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starter-academic-1 Public template
Forked from HugoBlox/theme-academic-cv🎓 Easily create a beautiful academic résumé or educational website using Hugo, GitHub, and Netlify
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starter-research-group Public template
Forked from HugoBlox/theme-research-group👥 Create a stunning Research Group Website with Wowchemy and Hugo
TeX MIT License UpdatedDec 29, 2020 -
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