IDAES platform examples and tutorials

A 3D coarse grained particle based model encapsulating the whole Drosophila wing pouch tissue to study the dynamics of epithelial folding during organ formation

The IDAES Process Systems Engineering Framework

Workshop tutorials for Pyomo.DoE

An object-oriented algebraic modeling language in Python for structured optimization problems.

A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling

Storing work and file history for work using this software.

Fast and automatic structural identifiability software for ODE systems

This is a code repository for the manuscript titled: From spikes to intercellular waves: tuning intercellular Ca2+ signaling dynamics modulates organ size control.

GenSSI 2.0 - Generating Series for testing Structural Identifiability

A MATLAB toolbox for analysing structural properties of nonlinear models (identifiability, observability, accessibility, controllability)

An epithelium simulation library

Nonlinear and Stochastic Optimization, CBE & ACMS 60499 / 40499 at U. Notre Dame

Tier 2 member for Workshop

CBE 20258 and CBE 60258: (Advanced) Data and Computing

A Python toolbox for structural identifiability and observability analysis of nonlinear models

Here is a repository for the manuscript titled MAPPER: An open-source, high dimensional image analysis pipeline unmasks differential regulation of Drosophila wing features developed and written by …