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bin3C-1 Public
Forked from cerebis/bin3CExtract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.
Python GNU Affero General Public License v3.0 UpdatedAug 5, 2020 -
kraken2 Public
Forked from DerrickWood/kraken2The second version of the Kraken taxonomic sequence classification system
C++ MIT License UpdatedMar 4, 2019 -
MetagenomeScope Public
Forked from marbl/MetagenomeScopeWeb visualization tool for (meta)genome assembly graphs
Python GNU General Public License v3.0 UpdatedFeb 7, 2019 -
MetaCarvel Public
Forked from marbl/MetaCarvelMetaCarvel: A scaffolder for metagenomes
C++ MIT License UpdatedJan 23, 2019 -
prokka Public
Forked from tseemann/prokka⚡ ♒ Rapid prokaryotic genome annotation
Perl UpdatedDec 17, 2018 -
Roary Public
Forked from sanger-pathogens/RoaryRapid large-scale prokaryote pan genome analysis
Perl Other UpdatedDec 5, 2018 -
centrifuge Public
Forked from infphilo/centrifugeClassifier for metagenomic sequences
C++ GNU General Public License v3.0 UpdatedNov 12, 2018 -
megahit Public
Forked from voutcn/megahitMEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
Cuda GNU General Public License v3.0 UpdatedNov 6, 2018 -
spacegraphcats Public
Forked from spacegraphcats/spacegraphcatsIn space, no one can hear you miao. And graphs!
Standard ML Other UpdatedNov 5, 2018 -
microbiome_helper Public
Forked from LangilleLab/microbiome_helperA repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.
Perl GNU General Public License v3.0 UpdatedOct 3, 2018 -
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metAMOS Public
Forked from marbl/metAMOSA metagenomic and isolate assembly and analysis pipeline built with AMOS
Roff Other UpdatedNov 20, 2017 -
Assemblytics Public
Forked from MariaNattestad/AssemblyticsAssemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.
Python UpdatedNov 2, 2017 -
srst2 Public
Forked from katholt/srst2Short Read Sequence Typing for Bacterial Pathogens
Python Other UpdatedMar 31, 2017 -
BIO309_Spring2017 Public
Forked from ianmisner/BIO309_Spring2017Course Page for BIOF-309 FAES Spring 2017
Python GNU General Public License v3.0 UpdatedFeb 22, 2017 -
R_for_biologists Public
Forked from MariaNattestad/R_for_biologistsScripts and data for Plotting in R for Biologists, a video course on YouTube
R UpdatedOct 17, 2016 -
bds-files Public
Forked from vsbuffalo/bds-filesSupplementary files for my book, "Bioinformatics Data Skills"
Python MIT License UpdatedNov 16, 2015 -
trimmomatic-1 Public
Forked from timflutre/trimmomaticRead trimming tool for Illumina NGS data.
Java UpdatedMar 10, 2015
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