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The repo is finally unlocked. enjoy the party! The fastest repo in history to surpass 100K stars ⭐. Join Discord: https://discord.gg/5TUQKqFWd Built in Rust using oh-my-codex.
Shiny app for visualizing TARGET pediatric AML data
Local API emulation for CI and no-network sandboxes
Template repository for Python projects
A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
⚒️ The open source dark software factory for expert engineers.
Rxiv-Maker is a GitHub-native framework that converts markdown into a publication-ready PDF. It automates scientific preprint generation with a focus on reproducibility and version control
working script for neural network DNAmethylation clock
Chrome extension to assist screening bioRxiv manuscripts
Repositioning and resizing of images and text directly in quarto revealjs slides
AI agents running research on single-GPU nanochat training automatically
Language Model Agents in R for AI Workflows and Research
Fast vectorization, topic modeling, distances and GloVe word embeddings in R.
Global genetic ancestry estimation from Whole Genome Sequencing data
ChromActivity is a computational framework for the annotation of regulatory activity genomewide, through integration of data from epigenomic maps and multiple functional characterization assays.
Intuitive guide to multi-omics integration with toy examples: supervised latent components (DIABLO), unsupervised shared/partial/unique structure (DIVAS), VAEs/conditional VAEs, and key baselines (…
Research code accompanying AlphaGenome
Our maintained PFN repository. Come here to train SOTA PFNs.
A Claude Code Plugin that provides an autonomous AI copywriter.
R package for bayesNMf, a computationally efficient Gibbs sampler for Bayesian Poisson NMF which automatically determines the number of latent factors while quantifying uncertainties of the learned…
Publication Page for MPAL Paper 2019