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Handy functions in R for the analysis of GWAS and related 'omics data.

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twillis209/r-tomics

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r-tomics

This R package is intended to house disparate functions I have found useful in processing data from GWAS and related study types. The name is an unspired portmanteau of my name and "'omics", and mention of the latter is aspirational at present as the code only relates to GWAS summary statistics.

NB: As of October '25 or so, many of the new features of this package have been vibe-coded with Claude Code 4.5 (that's right, I'm afraid, it's AI slop now).

Development workflow

See release.sh for the build and deployment script.

The YAML file defining the tomics-dev conda environment is located in the project's root directory. Note that at the moment it's still necessary to update the dependencies in recipe.yml, release.sh doesn't handle that yet.

Adding vdiffr tests

Upon adding a new vdiffr::expect_doppelganger tests case:

  • run devtools::test()
  • if new, review new snapshots under tests/testthat/_snaps
  • if a regression is detected, run testthat::snapshot_review() to review changes

TODO Update recipe.yml

I use attachments to update DESCRIPTION with new packages, but I should do the same to update recipe.yml.

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Handy functions in R for the analysis of GWAS and related 'omics data.

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