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Using hifi and ONT

Status: Open.

#115 In twolinin/longphase;

· mylena-s opened on Jan 19, 2026

SNP、indel and SV co-phasing

Status: Open.

#114 In twolinin/longphase;

· mianlee opened on Dec 31, 2025

Haplotagging supplementary alignments

enhancementNew feature or requestNew feature or request

Status: Open.

#106 In twolinin/longphase;

· jules-o opened on Jul 28, 2025

Merging phased SNV and SV VCFs?

Status: Open.

#104 In twolinin/longphase;

· matthewglasenapp opened on Apr 18, 2025

Haplotag command only tagging a small percentage of reads!

Status: Open.

#97 In twolinin/longphase;

· DHmeduni opened on Jan 14, 2025

High memory consumption of modcall

Status: Open.

#94 In twolinin/longphase;

· leonschuetz opened on Dec 12, 2024

Phasing somatic SNP/INDEL/SV/5mc

Status: Open.

#92 In twolinin/longphase;

· DayTimeMouse opened on Nov 28, 2024

The parameter setting in your pipeline of variant calling

Status: Open.

#91 In twolinin/longphase;

· Jerry-bioinformatics opened on Nov 22, 2024

Does longphase support SNVs from illumina/short-reads

Status: Open.

#88 In twolinin/longphase;

· eesiribloom opened on Sep 23, 2024

install with conda in v1.7.3

Status: Open.

#87 In twolinin/longphase;

· Jerry-bioinformatics opened on Sep 20, 2024

How to convert phased VCF to haplotype FASTA

Status: Open.

#84 In twolinin/longphase;

· FatYuanBao opened on Jul 24, 2024

autoreconf: error: aclocal failed with exit status: 2

Status: Open.

#75 In twolinin/longphase;

· sahuno opened on May 29, 2024