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cli2rest Public
A generic Docker image that wraps any CLI app in a RESTful interface
Python UpdatedDec 22, 2025 -
rnapolis-py Public
A Python library containing RNA-related bioinformatics functions and classes.
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cli2rest-bio Public
Automatic configurations for wrapping different bioinformatics tools in cli2rest container images
Python UpdatedDec 18, 2025 -
eltetrado Public
A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures
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BioCommons Public
Library with common classes, data structures and embedded static knowledge useful in bioinformatics libraries
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mcq4structures Public
A parent project for a set of subprojects related to Mean of Circular Quantities (MCQ).
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sgd-annotator Public
Annotate sequencing profiles of the S. Cerevisiae with metadata from SGD (Saccharomyces Genome Database) and Gene Ontology
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rsync-pdb-nucleic Public
Efficiently synchronize and selectively update the mmCIF files of nucleic acid structures from the PDBe.
Shell UpdatedAug 22, 2025 -
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fr3d-python Public
Forked from BGSU-RNA/fr3d-pythonPython implementation of FR3D
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RNA-BRiQ Public
Forked from Jian-Zhan/RNA-BRiQRobust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energy-scaled base-base knowledge-based potential
C++ UpdatedApr 28, 2025 -
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G4ShapePredictor Public
Forked from donn-liew/G4ShapePredictorPython MIT License UpdatedFeb 5, 2025 -
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RNAtango Public
RNA structure analysis in Torsion ANGle space
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CASP15_knotted_artifacts Public
Forked from ilbsm/CASP15_knotted_artifactsPrograms used in "Knotted artifacts in predicted 3D RNA structures"
Python GNU General Public License v3.0 UpdatedApr 19, 2024 -
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doi-to-pmid Public
Forked from michal-zurkowski/doi-to-pmidGather info about PMID and PMCID from provided DOI.
TeX UpdatedMar 22, 2023 -
i3-autolayout Public
Forked from BiagioFesta/i3-autolayoutService to automatically managing i3 window manager layout
Rust GNU General Public License v3.0 UpdatedJan 29, 2023 -
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occupancy-splitter Public
Optimally splits PDBx/mmCIF files with RNA chains having occupancy factor less than 1.0
Java MIT License UpdatedApr 13, 2022 -
fr3d-python-adapter Public
An adapter for fr3d-python, which reads an mmCIF file and produces a unified list of RNA interactions
Python MIT License UpdatedApr 13, 2022 -
maxit-docker Public
A Dockerfile to wrap MAXIT software to convert between PDB and PDBx/mmCIF seamlessly
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