Stars
Demultiplexing pipeline for sequencing data
A simple nextflow pipeline for Illumina run metrics (InterOp) and generation of fastq files (bcl2fastq)
🍸 Web-based database system for flow cell management (incl. REST API)
In-silico PCR, primer design and padlock design for in-situ sequencing
PrimerServer2: a high-throughput primer design and specificity-checking platform
In-silico PCR amplification on complete genomes
processes GoT amplicon data and generates a table of metrics
ABB tool for detecting systematic errors in DNA sequencing data
A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants
This is the git repository for erccdashboard on Bioconductor. Contributions: http://www.nist.gov/mml/bbd/erccdashboard.cfm, https://github.com/usnistgov/erccdashboard, http://tinyurl.com/erccsrm. B…
Inferring and visualizing clonal evolution in multi-sample cancer sequencing
Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
A SAmple MAnagement SYstem for robotic transfer of samples in 96 well plates
INC-Seq: Accurate single molecule reads using nanopore sequencing
Dimensionality reduction for single cell RNA-seq data
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Create timecourse "fish plots" that show changes in the clonal architecture of tumors
Python helpers for building dashboards using Flask and React
Coverage / read count calculator for sequencing experiments
MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
The Opa Language for Web Application Development
Create nice directory listings for s3 buckets with javascript and HTML.
Takes CSV or tab-delimited data from Excel and converts it into several web-friendly formats, include JSON and XML.
🐳 Containerize R Markdown documents for continuous reproducibility