Pre-release 2025.11.16 (#3343)

Automated changes for pre-release 2025.11.16

Pre-release 2025.11.09 (#3335)

Automated changes for pre-release 2025.11.09

Pre-release 2025.10.12 (#3324)

Automated changes for pre-release 2025.10.12

Pre-release 2025.09.21 (#3312)

Automated changes for pre-release 2025.09.21

Zenodo fixes (#3299)

* include hidden files

* triggers

* trigger workflows

* reset file

Use lockfiles from TARDIS instead of from TARDISBase (#3269)

* use lockfiles from tardis

* try new action

* trigger workflows

* action branch

Revise dependencies in README (#3257)

Fix default `interpolate_shells` in Formal Integral (#3249)

restore interpolate_shells if set to 0

diataxis (#3219)

* diataxis

* Move docs to appropriate folders

Co-authored-by: Deeksha <DeekshaMohanty@users.noreply.github.com>

* Enhanced glossary

* Fix typo that breaks codespell

* Remove dead link AI added

* Remove tutorial references from how-to page

* More glossary adds

* Reorg and rename

* Index reorgs and biblio rename

* Fix internal docs links and some underlinds

Co-authored-by: Deeksha <DeekshaMohanty@users.noreply.github.com>
Co-authored-by: Anirban <anirbaniamdutta@gmail.com>

* Fixes some more docs errors

* Simplify the main index

* Remove automatically generated files from PR

* Ignore autogenerated files

* Josh's glossary updates

Co-authored-by: Joshua Shields <54691495+jvshields@users.noreply.github.com>

* Improve analyzing TARDIS output page

---------

Co-authored-by: Andrew Fullard <andrewgfullard@gmail.com>
Co-authored-by: Deeksha <DeekshaMohanty@users.noreply.github.com>
Co-authored-by: Anirban <anirbaniamdutta@gmail.com>
Co-authored-by: Joshua Shields <54691495+jvshields@users.noreply.github.com>

fix more \AA warnings (#3212)