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numpyro Public
Forked from pyro-ppl/numpyroProbabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.
Python Apache License 2.0 UpdatedJan 7, 2026 -
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zwog Public
Grammar-based generation of structured cycling workouts
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jaxns Public
Forked from Joshuaalbert/jaxnsProbabilistic Programming and Nested sampling in JAX
Python Apache License 2.0 UpdatedAug 3, 2025 -
GPMicrobiome Public
A novel probabilistic approach to explicitly model overdispersion and sampling zeros in 16S rRNA sequencing data by considering the temporal correlation between nearby time points using Gaussian Pr…
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LuxGLM Public
LuxGLM is a method for quantifying oxi-mC species with arbitrary covariate structures from bisulphite based sequencing data. LuxGLM's probabilistic modeling framework combines a previously proposed…
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Splotch Public
Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data
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dm-haiku Public
Forked from google-deepmind/dm-haikuJAX-based neural network library
Python Apache License 2.0 UpdatedApr 30, 2025 -
outlines Public
Forked from dottxt-ai/outlinesStructured Text Generation
Python Apache License 2.0 UpdatedMar 14, 2024 -
Span Public
A simple js tool to annotate Spatial Transcriptomics (ST) data
HTML BSD 3-Clause "New" or "Revised" License UpdatedOct 10, 2023 -
raesymatto Public
Raesymatto: visualize genomic data
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedNov 27, 2021 -
trainerroad-to-text Public
Conversion of TrainerRoad workouts to text
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Lux Public
Lux is an integrative hierarchical Bayesian model for analyzing any combination of BS-seq/oxBS-seq/TAB-seq/fCAB-seq/CAB-seq/redBS-seq/MAB-seq/etc data enabling accurate and unbiased quantification …
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Spav Public
A tool for visualizing Splotch results
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 17, 2019
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