A specification that python filesystems should adhere to.

Neural networks for cryo-EM reconstruction

Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019

Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising w…

Multi-task and masked language model-based protein sequence embedding models.

Inference code for PoET: A generative model of protein families as sequences-of-sequences

Source code for "Explicitly disentangling image content from translation and rotation with spatial-VAE" - NeurIPS 2019

Source code for "Unsupervised Object Representation Learning using Translation and Rotation Group Equivariant VAE," in pytorch. NeurIPS 2022

Transformer And Rapid Dimensionless Instance Segmentation

Public release of Ptolemy package for automated targeting of Cryo-EM grids

Code and model weights for PoET-2, a retrieval-augmented multimodel protein language model for protein sequence generation and representation learning

Simple python interface for the OpenProtein.AI REST API.