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Understand your Git history!

C++ 2,045 143 Updated Dec 21, 2025

Adds or removes hydrogen atoms to achieve the appropriate molecular protonation state for a user-specified pH range

Python 51 13 Updated Dec 13, 2025

My obsidian templates. Particularly useful for academic research.

17 Updated Apr 15, 2025

SVG icons for popular brands

JavaScript 24,033 3,010 Updated Dec 22, 2025

Autocomplete your obsidian notes with AI, including ChatGPT, through a copilot-like interface.

TypeScript 345 38 Updated May 28, 2024

Simplify tagging in Obsidian. Instantly analyze and tag your document with one click for efficient note organization.

TypeScript 136 20 Updated Dec 27, 2024

Chat with your notes & see links to related content with AI embeddings. Use local models or 100+ via APIs like Claude, Gemini, ChatGPT & Llama 3

JavaScript 4,382 266 Updated Dec 22, 2025

Lecture notes of Professor Stéphane Mallat - Collège de France - Paris

Jupyter Notebook 31 2 Updated Sep 24, 2025

Implementation of the paper "Neuraldecipher - Reverse-engineering extended-connectivity fingerprints (ECFPs) to their molecular structures" by Tuan Le, Robin Winter, Frank Noé and Djork-Arné Clevert

Python 26 9 Updated Oct 1, 2020

My notes / works on deep learning from Coursera

Jupyter Notebook 472 363 Updated May 8, 2024

A collection of Jupyter Notebooks that are designed to teach life science students about deep learning.

Jupyter Notebook 157 35 Updated Sep 9, 2025

A simple Node.js tool for extracting wpress archive files generated by the All-in-one-Wp-Migration Wordpress plugin.

JavaScript 263 35 Updated Sep 13, 2023

A single model for all your molecular design tasks

Python 160 16 Updated Sep 17, 2025

DetSpace: A web server for engineering detectable pathways for bio-based production

JavaScript 5 Updated Nov 28, 2024

Learning atom mappings in chemical reactions through deep graph matching

Python 2 3 Updated Apr 30, 2024

SMARTS sanitization

Jupyter Notebook 32 4 Updated May 30, 2025

Reaction Decoder Tool (RDT) - Atom Atom Mapping Tool

Java 79 24 Updated Jan 11, 2022
Jupyter Notebook 4 2 Updated Jul 26, 2021

🔎 All-in-one Quick Look plugin

Swift 629 27 Updated Nov 24, 2025

Software package for computer aided synthesis planning

Python 244 60 Updated Nov 27, 2023

Bridge the gap between SBML data and Neo4j

Python 4 Updated Sep 2, 2024

SMILES Pair Encoding: A data-driven substructure representation of chemicals

Jupyter Notebook 214 30 Updated Apr 11, 2023

Cross-platform application for easy encrypted file, folder, and text sharing between devices.

Go 1,205 61 Updated Dec 1, 2025

Python dependency checker

Python 266 18 Updated Jul 1, 2025

♾ A Graph Visualization Framework in JavaScript.

TypeScript 11,857 1,580 Updated Dec 12, 2025

🚀 Awesome list of open source applications for macOS. https://t.me/s/opensourcemacosapps

46,703 2,443 Updated Dec 7, 2025

Chemical reaction data & benchmarks. Extraction and cleaning of data from Open Reaction Database (ORD)

Python 117 12 Updated Jul 14, 2025

Suite of tools that work on rpSBML format

HTML 7 2 Updated Dec 17, 2025

Repository of the InChI Resolver project - linking InChI related data and resources on the Internet

Python 5 Updated Apr 22, 2022
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