A flexible pipeline for complete analysis of bacterial genomes

Amplicon sequencing analysis workflow using DADA2 and QIIME2

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

CAMITAX: Taxon labels for microbial genomes

Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.

Please don't break!!

Simple nextflow script to run de-novo assembly on nanopore data with Flye and polishing the assembly with medaka.

A minimal template for Nextflow based project.

Repository to host tool-specific module files for the Nextflow DSL2 community!

POC repo to test NF behaviour with symlinks

Taxonomic profiling ONT metagenomics reads using minimap2

Nextflow pipeline to generate simulated amplicon datasets