Supplementary code and data for our manuscripts “Novel integrative elements and genomic plasticity in ocean ecosystems” describing Tycheposons - a new class of mobile genetic elements in Prochlorococcus and other marine bacteria that are abundant in marine vesicles and viruses.

See

• element-finder/bin for the scripts to predict the mobile elements in genomic data.
• element-finder/data for the profiles of signature genes.
• elements-pro for elements in Prochlorococcus.
• elements-gorg-single-cells for elements in other marine bacteria.
• elements-tara-viral for elements found in Tara Oceans viral-fraction metagenome assemblies.
• data-pro for reference-scaffolded and annotated Prochlorococcus genomes and a phylogenetic tree.
• MIT0604-nanopore for the nanopore assemblies of Prochlorococcus strain MIT0604 containing copies of a mobile element carrying a nitrate assimilation gene cluster.
• rnaseq-pro for differential gene expression analysis of Prochlorococcus with focus on element response
• YR-phylogeny for sequences, alignment and phylogenetic tree of tyrosine recombinases.
• vesicles-abundance for differential abundance analysis of element hallmark genes in vesicles