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thomsoncd
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STAR
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Commits on Jan 8, 2016
Cleaned up the code to remove compilation warnings.
alexdobin
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c514c69
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Commits on Jan 4, 2016
Implemented --outSAMunmapped Within KeepPairs option to record unmapped mate adjacent to the mapped one, in case single-end alignments are allowed.
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a5975c2
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Commits on Dec 23, 2015
Merge branch 'master' of /sonas-hs/gingeras/nlsas_norepl/user/dobin/STAR/STAR
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207a09b
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Implementing paired output for single-end alignments.
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71878ee
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2.5.0c Mac OSX executables.
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7612ef0
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2.5.0c
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Commits on Dec 21, 2015
Merged with master
alexdobin
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8ca6c67
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Increased speed of the suffix array generation.
alexdobin
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98f8e11
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Commits on Dec 17, 2015
Fixed a bug that caused genome generation stalling in some cases.
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3060605
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Implemented --genomeSuffixLengthMax option to control max siffix length at the genome generation step. Fixed a bug that caused genome generation stalling in some cases.
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86c2cd4
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Commits on Dec 9, 2015
In Aligned.toTranscriptome.out.bam (--quantMode TranscriptomeSAM), non-primary SAM flag is assigned to all but one randomly selected alignment.
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6dc1798
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Fixed a bug that filtered out some chimeric junctions.
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470e9f4
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Commits on Dec 3, 2015
Fixed a bug that prevented chimeric output for some of the circular configurations.
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7e15df9
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Commits on Dec 1, 2015
Prohibit --outSAMtype SAM with othet options.
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aa06a08
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Commits on Nov 30, 2015
Mac binaries for 2.5.0b from travis.
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9f9e8b4
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Fixed a problem with non-primary alignment flags with --outSAMmultNmax option.
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70b6859
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Commits on Nov 20, 2015
Added counting of chimeric reads into Log.final.out .
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Commits on Nov 18, 2015
Compiled executables.
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f58b9c4
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Fixed a bug in --outSAMfilter KeepOnlyAddedReferences.
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ce1ee43
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Commits on Nov 17, 2015
Updated executables.
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454728d
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Fixed a minor bug that caused rare seg-faults.
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7567018
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Commits on Nov 13, 2015
Fixed a minor bug in STARlong extension at the ends of the read.
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fad55ce
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Commits on Nov 11, 2015
Fixed a seg-fault that occurred when non-default value of --genomeChrBinNbits was used.
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ebd9473
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Commits on Nov 10, 2015
Updated executables
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4d6126a
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Fixed a seg-fault that occurred when junctions where inserted after inserting reference sequences.
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53edb1c
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Commits on Nov 7, 2015
STAR_2.5.0a
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4e1b232
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Added STARlongForMacStatic compilation target to Makefile
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57c5ffc
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Commits on Nov 6, 2015
Reformatted CHANGES.md
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7e9715a
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Updated RELEASEnotes
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f07d43f
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Updated CHANGES.
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60e242b
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Implemented random multialignment output, see CHANGES for details.
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6189527
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Commits on Nov 5, 2015
Recompiled binaries.
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5f2df18
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Merge Christian Krause's pull request which improves handling of the compilation flags in the Makefile.
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Merge pull request #80 from wookietreiber/wip-build-2
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Commits on Nov 4, 2015
Implemented --outSAMfilter KeepOnlyAddedReferences option.
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f09d8a9
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