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walkercreek Public
Forked from UPHL-BioNGS/walkercreekA nextflow pipeline for influenza genome analysis
HTML MIT License UpdatedFeb 14, 2025 -
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mycosnp-nf Public
Forked from CDCgov/mycosnp-nfnf-core/mycosnp
Nextflow Apache License 2.0 UpdatedFeb 14, 2025 -
test_datasets Public
Test data to be used for automated testing with the nextflow pipelines
MIT License UpdatedNov 15, 2023 -
wtfpython Public
Forked from satwikkansal/wtfpythonWhat the f*ck Python? 😱
Python Do What The F*ck You Want To Public License UpdatedApr 28, 2023 -
Cecret Public
Forked from UPHL-BioNGS/CecretNextflow workflow for our analysis of SARS-COV-2
Nextflow MIT License UpdatedNov 7, 2022 -
Awesome-Bioinformatics Public
Forked from danielecook/Awesome-BioinformaticsA curated list of awesome Bioinformatics libraries and software.
UpdatedOct 18, 2022 -
seqkit Public
Forked from shenwei356/seqkitA cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
Go MIT License UpdatedOct 8, 2022 -
nf-flu Public
Forked from peterk87/nf-fluInfluenza genome analysis Nextflow workflow
Nextflow MIT License UpdatedSep 1, 2022 -
miniwdl Public
Forked from chanzuckerberg/miniwdlWorkflow Description Language developer tools & local runner
Python MIT License UpdatedAug 22, 2022 -
staphb_toolkit Public
Forked from StaPH-B/staphb_toolkitPython Toolkit for using containerized programs in either Singularity or Docker
Nextflow GNU General Public License v3.0 UpdatedAug 22, 2022 -
nf-core_modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedAug 22, 2022 -
TBProfiler Public
Forked from jodyphelan/TBProfilerProfiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
Python GNU General Public License v3.0 UpdatedAug 22, 2022 -
docker-builds Public
Forked from StaPH-B/docker-builds📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics
Dockerfile GNU General Public License v3.0 UpdatedAug 22, 2022 -
General_LW_scripts Public
Forked from UPHL-BioNGS/General_LW_scriptsThe scripts that UPHL uses to download things from basespace and run respective workflows
Shell GNU General Public License v3.0 UpdatedAug 22, 2022 -
Grandeur Public
Forked from UPHL-BioNGS/GrandeurUPHL's Reference Free Pipeline
Nextflow GNU General Public License v3.0 UpdatedAug 4, 2022 -
nf-core_viralrecon Public
Forked from nf-core/viralreconAssembly and intrahost/low-frequency variant calling for viral samples
Nextflow MIT License UpdatedMay 17, 2022
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