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pymmcore-plus Public
Forked from pymmcore-plus/pymmcore-plusPure python/C++ micro-manager ecosystem
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mrc Public
Read and write .mrc and .dv (deltavision) image file format.
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yaozarrs Public
Yet Another Ome-ZARR Schema❗️
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nd2 Public
Full-featured nd2 (Nikon NIS Elements) file reader for python. Outputs to numpy, dask, and xarray. Exhaustive metadata extraction
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cmap Public
Forked from pyapp-kit/cmapScientific colormaps for python, with only numpy dependency
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staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 16, 2025 -
FPbase Public
The Fluorescent Protein Database
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ome-types Public
native Python dataclasses for the OME data model
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pydantic-tensorstore Public
Pydantic models for the TensorStore Spec
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mmcore-schema Public
Schema for MMCore
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 15, 2025 -
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bffile Public
Yet another Bio-Formats wrapper for Python
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magicgui Public
Forked from pyapp-kit/magicguibuild GUIs from python functions, using magic.
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scyjava Public
Forked from scijava/scyjava⚡ Supercharged Java access from Python ⚡
Python The Unlicense UpdatedDec 10, 2025 -
acquire-zarr Public
Forked from acquire-project/acquire-zarrStreaming directly to Zarr on the file system or S3
C++ Apache License 2.0 UpdatedDec 8, 2025 -
mkdocs-api-autonav Public
MkDocs plugin for autogenerating API docs with navigation
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griffe-fieldz Public
Forked from pyapp-kit/griffe-fieldzGriffe extension to inject field metadata into mkdocstrings (supports dataclasses, pydantic, attrs, and more)
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pydantic-zarr Public
Forked from zarr-developers/pydantic-zarrPydantic models for Zarr
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 6, 2025 -
fpbasepy Public
Python wrapper for FPBase.org GraphQL API.
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pymmcore-widgets Public
Forked from pymmcore-plus/pymmcore-widgetsA set of Qt-based widgets onto the pymmcore-plus model
Python Other UpdatedDec 2, 2025 -
useq-schema Public
Forked from pymmcore-plus/useq-schemaAn implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 1, 2025 -
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pycudadecon Public
Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
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napari-ndtiffs Public
A napari plugin to load & deskew folders of lattice light sheet TIFFs
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LLSpy Public
Lattice light-sheet post-processing utility.
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