Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

Nanopore sequencing-based Amplicon Pipeline: optimised for full-length, 16S and 18S mixed amplicon datasets, in a fast and computationally efficient manner, setup for use of 515Y/926R primers, but also compatible with other cross-domain primers.

Make Picrust2 Output Analysis and Visualization Easier

Sequence based 16S rRNA Taxonomic classifier using MLP

Taxonomic classcification of Lactobacillaceae from 16S gene amplicon sequencing data

Chemical metrics for microbial communities

Microbiome data from stool samples was sequenced using the 16S region. Two hypervariable regions were used, V1-V3 and V3-V4.

The `crest4` python package can automatically assign taxonomic names to DNA sequences obtained from environmental sequencing.

Pipeline to analyze 16S rRNA sequencing data using DAGman and HTCondor.

This repository contains my first analysis workflow using Qiita and Qiime 2. It processes and analyses 16s rRNA data from my raw reads for diversity analysis and taxonomy

Estimating Phylogenetic trees using six microorganisms 16S rRNA gene with Unsupervised Learning, web based tools and Molecular Evolutionary Genetics Analysis MEGA7

This is an easy guide of PacBio 16S metabarcoding analysis for amateur bioinformatician

An open-source R package containing decontamination pipelines for low-biomass microbiome data

Hypervariable region primer-based extractor for 16S rRNA and other SSU/LSU sequences.

RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties.

Correlation analysis and visualization

NGS4ECOPROD - An easy-to-use conda environment and pipelines for metagenome sequence analysis

Amplicon sequencing workflow with snakemake and dada2

A deep learning framework for hierarchical taxonomy classification of 16S rRNA gene sequences