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tcga

Here are 11 public repositories matching this topic...

HuaZou / TCGA_HNSC

An immune-related gene prognostic index for head and neck squamous cell carcinoma

bioinformatics tcga

Updated Nov 16, 2021
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inab / TCGA_benchmarking_workflow

benchmarking nextflow tcga openebench

Updated Feb 21, 2023
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MI2DataLab / KRAB_ZNF

KRAB-ZNF explorer - expression of KRAB-ZNF- transcription factors in The Cancer Genome Atlas study

bioinformatics shiny tcga cancer-genome-atlas krab-znf

Updated Jul 31, 2019
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Moha-cm / RNAseq-Analysis

Bulk Rna-seq Analysis

r tcga gene-expression r-markdown bash-script rna-seq-analysis bwa fastqc gdc-portal trimmomatic getx deseq2-analysis featurescount

Updated Nov 14, 2024
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firashatoum / scrna-glioblastoma

Full scRNA-seq analysis of glioblastoma tumor microenvironment. 10x Genomics preprocessing, Seurat clustering and cell type annotation, and TCGA-GBM bulk integration for immune cell survival analysis. Bash + R.

bash bioinformatics r tcga scrna-seq glioblastoma seurat

Updated Apr 13, 2026
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4DtyU / R-scripting-samples

Example code supporting immunology research

cancer tcga immunology shiny-apps transcriptomics differential-expression munging elisa survival-prediction flowcytometry limma-voom kirc

Updated Oct 11, 2023
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mlmms / RegularizedCoxRegressionModelling_PatientStratification_SurvivalAnalysis

tcga feature-selection survival-analysis biomarker-discovery glioblastoma glioma regularisation-methods

Updated Oct 3, 2025
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an-mistral / Bio-Gene-Expression-Analysis

HER2-Amplified vs Non-Amplified Breast Cancer Transcriptome Analysis (TCGA BRCA): Differential Expression, Pathway Enrichment, and Lasso-Cox Survival Stratification

Updated Jan 12, 2026
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mariachiaragrieco / bulk-RNAseq

bulk-RNAseq analysis for Transcriptomics Course 2021 (MSc Bioinformatics for Computational Genomics)

tcga transcriptomics differential-expression bulk-rna-seq rnaseq-analysis

Updated Apr 2, 2022
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lcolladotor / recount-brain-bog19

Poster for Biology of Genomes 2019 (#bog19) on recount-brain

sample metadata public poster curated tcga human rnaseq gtex reproducibility brain recount sra recount2 bog19

Updated Aug 23, 2019
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vsundesha / TCGA_benchmarking_workflow

workflow tcga openebench

Updated Sep 10, 2019
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