TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Nextflow pipeline to processed all RNA-seq data from FAANG
SLAMSeq processing and analysis pipeline
A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
Nanopore transcriptomics workflow with multiple transcript reconstruction options
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Bioinformatics pipeline that makes use of expression and open chromatin data to identify differentially active transcription factors across conditions.
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