Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught by Dr. Miler Lee.

Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.

Machine learning and bioinformatic workflows for gene discovery.

Data and scripts associated with H. limbata 2014 1st instar transcriptome

🩺 Assessing StringTie, Salmon, and Kallisto with simulated RNA-Seq reads with noises introduced in read- and annotation-level.

Common BASH routines for computational biology

Repositorio para curso Transcriptomica

A protocol for applying low-coverage whole-genome sequencing data in structure variation studies

Pipeline for Analysis of RNA sequencing data.

Workflow to comparative transcriptomics

A tailored identification framework to depict the landscape of transcribed conserved non-coding elements (TCNEs)

Transcriptomic analysis.

Leukemia is a cancer of blood-forming tissues. For this reason, it is relevant to analyze the differences in gene expression for people affected by this disease, which is the purpose of this project.

Computational Biology & Bioinformatics Resources

This project studies the evolution of color polymorphism in the granular poison frog Oophaga granulifera

SNU-seq data processing and analysis scripts

Genomic data analysis files and tools for processing Arabidopsis thaliana sequencing data

Independent Research in Cell and Systems Biology I at the University of Toronto

A containerized, workflow-orchestrated cloud+local platform for RNA-seq analysis.