ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
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Updated
Dec 11, 2025 - Python
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Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
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Dec 8, 2025 - Python
🎇 Scale interactive spatial omics in the browser to thousands of images | https://rakaia.io/
browser viewer spatial-analysis spatial-data omics spatial-proteomics histology spatial-transcriptomics zarr visium multiplexed-imaging imaging-mass-cytometry xenium spatial-biology
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Dec 17, 2025 - Python
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