A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

Workflow Description Language developer tools & local runner

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

Configure workflow/pipeline tests using yaml files.

CLI for interacting with Cromwell servers

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

Rich IDE support for Workflow Description Language

Create WDL documentation using Markdown.

[Experimental] Workflow Definition Language (WDL) to CWL

A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.

Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)

Automatic Input Documentation for WDL workflows

Interoperable execution of workflows using GA4GH APIs

SFN-WDL infrastructure for pipeline execution - a template repository and Terraform module for SFN-WDL based projects

Tools to validate and test WDL-based repositories. To be used as part of CI/CD pipelines

Workflows and scripts for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing.

Generate documentation and visual diagrams for WDL files.

A web-based visualization tool to view (inter and inner) dependencies of WDL workflows.

Convert Workflow Definiton Language (WDL) to CWL

LLM-powered documentation generator for bioinformatics workflows (Nextflow/WDL)