Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

Making whole bacterial genome sequencing data analysis easy

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

HydrAMP: a deep generative model for antimicrobial peptide discovery

Code for the paper "Antimicrobial resistance prediction in clinical isolates through machine learning on MALDI-TOF mass spectra"

Harmonization of AMR predictor tool outputs

AMR/VF LGT focused bacterial genomics analysis workflow

Antimicrobial Resistance Test Interpretation Engine

An antimicrobial resistance (AMR) dashboard.

An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences

Detect the presence of specific resistance genes in a sample using the IRIDA system

Antimicrobial resistance prediction app for KBase

amR package suite: 1) amRdata, 2) amRml, 3) amRshiny

MTB++ a software developed to predict antimicrobial resistance to 13 antibiotics and 3 families of antimicrobials.

Data and code repository for study aiming to understand ESBL carriage in Blantyre, Malawi

A scalable Nextflow pipeline for automated WGS analysis, optimized for Oxford Nanopore and hybrid ONT–Illumina assemblies in clinical microbiology research.

PhyloTrace is a GUI platform for bacterial monitoring offering a toolkit of analyses like hashed cgMLST typing and Antimicrobial Resistance Screening.

Comprehensive toolkit for MALDI-TOF mass spectrometry data preprocessing for antimicrobial resistance (AMR) prediction purposes

Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants