Visualing species tree from ASTRAL with gene tree discordance
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Updated
May 13, 2025 - Python
Visualing species tree from ASTRAL with gene tree discordance
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Project template for Python projects + uv + Vertical Slice Architecture
lightweight GUI using wxPython that assembles a string to run ASTRAL from the command line.
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This is a Snakemake workflow that calculates maximum-likelihood gene trees with IQ-TREE and 100 bootstrap replicates for each tree. Then, consensus trees are produced and combined to infer a species tree following the multispecies coalescent model with ASTRAL. Imported from my GitLab.
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