A simple nextflow pipeline for calling peaks and producing tracks from ChIP-seq data

Simple pipeline for processing of sequencing data from thCHART, ChIP-seq, APEX-ChIP and similar experiments

Java BigWig Reader

Automatically exported from code.google.com/p/bigwig

Ruby wrapper to libBigWig compatible with pyBigWig

A small script to find peaks from the .bigWig file and output them in a .bed file.

Sequencing data preprocessing

Generate mappability tracks as BigWig file from genome fasta with GEM

RETIRED: Dockstore implementation of cgpBigWig utility. See https://github.com/cancerit/cgpBigWig/

Explore and visualize genomics bigWig data.

A set of tools for wiggle file

ZEN-norm is a Python package for normalising bigWigs of genomic signal, reversing prior normalisation and benchmarking normalisation method performance.

An HMM-based domain caller from bw

Python implementation to calc mappability-sensitive cross-correlation for fragment length estimation and quality control for ChIP-Seq.

libBigWig wrapper for Nim

BigWIG, BigBED and TDF for the JVM

R interface to megadepth: BigWig and BAM related utilities

command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig