MCP Server and Gradio app for performing NCBI Blast on a DNA sequence

The Blastn (Basic Local Alignment Search Tool for Nucleotides) algorithm with Smith-Waterman scoring implemented for FPGAs

The impact of transitive annotation on the training of taxonomic classifiers

How do I automate extracting multiple gene sequences from multiple genomes?

ResTransfer is a bioinformatics pipeline that predicts horizontal gene transfer (HGT) of resistance genes in microbes using BLAST and scoring, providing categorized insights into antibiotic resistance transfer likelihood.

How to automatically download blastn database, run blastn, and extract blastn hit sequences?

A typesafe Scala BLAST API

Filter out sequences in FASTQ files that match a reference genome

Automações para realizar alinhamentos em grande escala com o Blast

MIP_ORACLE: Identifies unique target regions with diagnostic significance in pathogens.

omicR for R studio creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data) and long-read sequences (Illumina, PacBio… etc). You can use refer…

A pipeline developed for the analysis of chromosome position of target protein sequences.

PhylUp - a python package to automatically generate alignments (or update alignments and phylogenies) using local sequences or a local Genbank database while controlling for the number of sequences per OTU.

A bioinformatics-driven assessment of Genetically Modified Organism (GMO) status in maize and soyabeans

BLAST searches in parallel using GNU Parallel

On étudie dans ce projet les éléments transposables de l’Arabidopsis thaliana. L’objectif de ce projet est de concevoir une base de données regroupant l’ensemble des copies, ainsi que les copies de référence, de six familles d’éléments transposables issues du génome TAIR10 de l’Arabidopsis thaliana, sélectionnées par nos soins.

This repository hosts the production build of the BrassicaLnc frontend for deployment via GitHub Pages. It delivers the public website for exploring Brassica napus long non-coding RNA data, including expression profiles, lncRNA–miRNA interactions, and TE associations.

Parser of BLAST results

Pipeline to create phage genome synteny graphics from genbank files