🧬 gget enables efficient querying of genomic reference databases
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools
Zytome is declarative library for handling gene expression data for various data portals or datasets.
Final project for DDLS2024 by Daniil Sarkisyan
MCP server for CZ CELLxGENE Discover Census. Single-cell RNA-seq queries, ontology-aware (CL, UBERON, EFO), provenance-tracked. For Claude, Cursor, MCP clients.
Add a description, image, and links to the cellxgene topic page so that developers can more easily learn about it.
To associate your repository with the cellxgene topic, visit your repo's landing page and select "manage topics."