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Common Workflow Language

CWL documents describe workflows made of command line data analysis tools in a portable, reproducible, and reusable fashion.

Here are 12 public repositories matching this topic...

umccr / cwl-novice-tutorial

CWL Novice Tutorial

cwl

Updated Jan 14, 2025
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r78v10a07 / RNASeqWF

This code shows the validation of Differential Gene Expression Analysis from RNASeq data using as quantificator tools TPMCalculator

jupyter-notebook rnaseq cwl

Updated Jan 15, 2019
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agduncan94 / cwl_generator

A simple angular form for generating CWL tools and workflows

docker angular cwl

Updated Apr 25, 2017
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drill-hawk

tom-tan / drill-hawk

A visualizer of workflow execution records for CWL

visualizer common-workflow-language cwl commonwl

Updated Apr 19, 2021
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man4ish / omnibioai-workflow-bundles

Engine-agnostic, versioned bioinformatics workflow bundles for OmniBioAI, supporting WDL, Nextflow, Snakemake, and CWL. Designed for reproducible, registry-driven pipeline plugins across genomics and multi-omics.

workflow snakemake wdl cwl nexflow

Updated Mar 22, 2026
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emulation-as-a-service / cwl-example-workflow

experiment cwl

Updated Apr 12, 2023
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common-workflow-language / governance

Holds public material generated by and for the CWL board.

cwl

Updated May 22, 2024
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broadinstitute / wdl4s

Scala bindings for WDL

scala wdl cwl

Updated Jan 24, 2018
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EBI-Metagenomics / workflow-is-cwl

This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts

workflow diamond common-workflow-language transcriptome cwl marine transdecoder cwl-workflow cwl-descriptions phmmer cwl-description

Updated Jun 2, 2020
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about

workflowhub-eu / about

Website about the project WorkflowHub

metadata workflow repository open-science reproducibility cwl seek researchobject bioschemas biohackcovid20

Updated Feb 12, 2026
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carpentries-incubator / cwl-novice-tutorial

Introduction to Workflows with Common Workflow Language

english lesson cwl workflow-management pre-alpha carpentries-incubator

Updated Apr 17, 2024
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EBI-Metagenomics / pipeline-v5

This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

workflow metagenomics common-workflow-language cwl metagenomic-analysis metagenomic-classification metagenomic-data amplicon-pipeline cwl-workflow cwl-descriptions metagenomic-pipeline wgs-analysis mgnify

Updated Oct 3, 2025
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Created by Peter Amstutz, John Chilton, Michael R. Crusoe, Nebojša Tijanić, and the CWL Community

Released January 2015

Followers: 14 followers
Organization: common-workflow-language
Website: github.com/topics/cwl
Wikipedia: Wikipedia