CWL Worflows processor to generate PlantUML diagrams

CWL Worflow inputs/outputs to OGC API Processes inputs/outputs

Simple utilities to load CWL documents in a transparent way

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Project Manager for NGS data analysis

Analysis workflow for novel gene search based on structural similarity search

Boostrap a Python CLI using click from a CWL CommandLineTool

CWL on Kubernetes

Prototype implementation of LivePaper with GIS indices as the subject.

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

OGC API Processes with ZOO Project

A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

A list of subworkflows used for MSK-ACCESS data processing.

Workflow for making MSK-ACCESS standard binary alignment mapping file.

Request for Comments (RFCs) on the St. Jude Cloud Project.

Workflow for collapsing of standard binary alignment mapping file generated by MSK-ACCESS

a common language workflow , workflow to process Fastq files