Statistical Analysis of RNA-Seq Tools

scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two conditions

RNA-seq, QC and differential analysis pipeline

A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)

SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualization.

PenDA is a rank-based method for personalized differential analysis.

Comparison of gene usage in immune repertoires under different biological conditions

The statistical utility for RBP functions (SURF)

Galaxy wrappers for SARTools (Statistical Analysis of RNA-Seq Tools)

Large-scale Benchmarking of Single-cell Differential Expression Analysis Methods

A Shiny application for performing differential accessibility analysis of consensus peaks' count data on HiPerGator storage and/or preparing peak data and bam files for such an analysis.

A R package to jointly embed peaks and genes from paired scATAC-seq and scRNA-seq data into a shared low-dimensional space and enable condition comparison.