R package for DNA methylation analysis
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Updated
Aug 18, 2024 - R
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differential-methylation
Here are 7 public repositories matching this topic...
A tool for discovering Differentially Methylated Regions
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Mar 7, 2022 - R
R package for DNA Methylation Analysis (and Gene Expression Integration) for Illumina Infinium Array and BS-Seq Data
r-package dna-methylation differential-methylation rrbs differentially-methylated-regions illumina-450k-array illumina-epic-array reduced-representation-bisulfite-sequencing cpg-site dna-methylation-and-gene-expression-integration targeted-bisulfite-sequencing
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Apr 12, 2024 - R
An R package for DNA methylation data length bias adjustment in gene set testing
enrichment ontology methylation epigenetics logistic-regression dna-methylation differential-methylation enrichment-analysis generalized-linear-models ewas gene-set-enrichment-analysis
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Dec 13, 2025 - R
Pipeline for differential DNA methylation analysis
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Jun 23, 2025 - R
Integrative Cell-Type-Specific Differential Methylation Analysis Pipeline
epigenetics dna-methylation differential-methylation ewas cell-type-specific-differential-methylation
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Apr 21, 2025 - R
Differential methylation analysis pipeline using Illumina 450k array data from GEO (GSE42861). Includes preprocessing, QC, normalization, limma-based DMP detection, annotation, and visualization (volcano plot, MA plot, PCA). Built in R for reproducibility and educational use.
bioinformatics r methylation epigenetics dmp dna-methylation differential-methylation limma minfi 450k-array
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Jun 29, 2025 - R
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