Cuadernos de Jupyter para el curso completo de Bioinformática. Cubre desde el manejo básico de secuencias FASTA hasta genómica comparativa y ensamblaje de genomas. Cada cuaderno incluye teoría explicada paso a paso, implementación en Python desde cero y visualizaciones con matplotlib.

This repository contains a simple, linear Next-Generation Sequencing (NGS) pipeline using bash for paired-end FastQ data processing, optimized for Whole Exome Sequencing (WES).

DNA curvature analysis.

block-based integer chaos game representation for DNA sequences

Computational toolkit for DNA sequence analysis.

Script for removing or counting invariant sites for the RAxML ascertainment bias corrections

MinION Classification & Alerting System

An application for DNA sequence analysis written in Scala and deployed using Apache Spark&Hadoop.

Analysis of FASTA ,Protein,DNA sequence.

Analysis of DNA Sequence Classification Using Neural Networks - Bioinformatics Course Project - Winter 2022

DNAssist: the integrated editing and analysis of molecular biology sequences in Windows

App for analysing genetic code

Alignment-free Method Based on Image Texture Analysis

The Smith-Waterman algorithm finds the optimal alignment of two sequences using dynamic programming techniques; Smith-Waterman is commonly used for DNA sequence alignment

The repository contains the codes for the prediction of YY1 chromatin loops using densely connected neural network based on Kmer embeddings.

Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.

Data Science Tools, Libraries, Classes and Functions

Simple Markov model of nucleotide composition for simulation and sequence analysis