Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)

Interactive tool for investigating coverage gaps in eDNA metabarcoding reference databases for marine, freshwater, and elasmobranch fish species

A set of functions for effective ASV filtering in eDNA metabarcoding data on the basis of GMM

Official GitHub repository for the R package "Species Identity and Evolution in R" (spider)

eDNA pipeline

Data processing workflow and supplementary data for Li et al. 2019 - Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the quality of lakes

Environmental DNA reflects common mitochondrial haplotypic variation

Data & Code Supplement for "Environmental DNA as a management tool for tracking artificial waterhole use in savanna ecosystems"

Data processing workflow and supplementary data for Li et al. 2018 - The effect of filtration method on the efficiency of environmental DNA capture and quantification via metabarcoding

(old) Primer scripts to get your metabarcoding data from QIIME2 to R

Supplementary files for the paper "Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark"

Comparing Machine Learning Models

eDNA analysis pipeline used by CGI

R scripts, metadata, and processed data for the manuscript "Spatiotemporal stability of fish communities in a regulated stream: Insights from environmental DNA"