em-seq

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An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.

snakemake pipeline methylation epigenetics bisulfite bs-seq bsseq em-seq emseq

Pipeline for BS-Seq data based on snakemake

snakemake pipeline conda epigenetics dna-methylation wgbs bismark bisulfite-sequencing em-seq snakemake-bisulfite

An integrated deconvolution approach to cfDNA methylation data.

methylation wgbs deconvolution cfdna em-seq

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