💾 📃 "Reads to report" for public health and clinical microbiology

Targeted Amplicon Bisulfite Sequencing Analysis Tool

Simple scripts for handling Unique Molecular Indexes in Fastq and Bam files

📦 Interleave and deinterleave FASTQ files. Streams and gzipped FASTQ files are accepted.

Tool extracts the best representative exact duplicate sequences from PE fastq files using UMI approach (reference alignment free).

ECS 124 - Theory and Practice of Bioinformatics

Filter out sequences in FASTQ files that match a reference genome

Various components for building RNA sequencing applications in Perl

A collection of code snippets and scripts related to my bioinformatics works