Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.
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Mar 26, 2026 - Python
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gene-regulation
Here are 11 public repositories matching this topic...
Predict small molecule-mediated regulatory effects on miRNA expression
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Mar 9, 2026 - Python
pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs
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Feb 10, 2026 - Python
Code and data used to create the JASPAR UCSC Genome Browser tracks data hub
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Dec 11, 2025 - Python
Code and data used by the JASPAR profile inference tool
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Jan 3, 2025 - Python
A powerful abstraction of gene databases
bioinformatics gene-expression gene-regulation gene-ontology drug-discovery genes bioinformatics-tool drug-target-interactions gene-enrichment gene-relationships gene-databases
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Dec 17, 2024 - Python
gene-regulation spatial-transcriptomics cell-cell-communication spatial-omics single-cell-multi-omics
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Dec 15, 2024 - Python
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Nov 22, 2022 - Python
Analysis and retrieval of Regulatory EleMents (REMs) linked to genes
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Sep 23, 2022 - Python
An integrative toolkit for detecting cell type-specific regulators
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May 21, 2020 - Python
Integrated workflow to predict super-enhancers and compute feature importance
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Mar 14, 2018 - Python
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