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axp-knickei / X-ARCH

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Xtreme Archaeal Analysis (X-ARCH) is a bioinformatics pipeline for the assembly, binning, and metabolic characterization of Archaeal Metagenome-Assembled Genomes (MAGs) from extreme environments. Includes automated QC, taxonomy (GTDB-Tk), functional annotation (DRAM/antiSMASH), and NCBI submission formatting.

bash mag bioinformatics pipeline genomics metagenomics microbiology comparative-genomics wgs archaea extremophiles nextgen-sequencing gtdb-tk
  • Updated Dec 9, 2025
  • Shell

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