Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species

A selection of databases for Genestrip

Tools to discover natural selection given multiple evolved DNA sequences (e.g., gnomad cohort, or multiple tumor samples)

Pangenome openness from k-mers or genes

k-mer similarity analysis pipeline

kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more

dna/rna alignment classifier

Obtain k-mer counts from fastx files

Parallel String Graph Construction, Transitive Reduction, and Contig Generation for De Novo Genome Assembly

Count kmers with a more efficient (faster) hash table

Very large scale k-mer counting and analysis on Apache Spark.

vue app with flask REST api to process genomic data

Bioinformatics 101 tool for counting unique k-length substrings in DNA

A seed-based homology searching tool

K-mer counting algorithms and count-data utilities for the BioJulia framework

Various python projects.

Implementation of k-mer counting algorithms BFCounter and experimental implementation of Misra-Gries. The goal is to use as little memory as possible.

Minimizer counting and analysis

fast and lightweight counting of short k-mers